MKV to iPod Touch conversion issues

[J_Uneek]

I have a 2nd generation 32gb iPod touch and I am trying to convert some MKV viles to watch on the iPod. I use videora, but every time I use it, the video plays really slow and the audio is at regular speed. When I convert other file types, it's fine. Does anybody know a better method or maybe some specific settings I should be using in videora? I tried several different profiles there. I tried Cucusoft as well which did a better job, the audio is slightly ahead of the video. I appreciate any feedback.